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Ncbi Sequence software
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Ncbi Sequence

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Released: March 27, 2008  |  Added: March 28, 2008 | Visits: 2.234

GENOM 2005 Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology,... Platforms: Windows

License: Demo Cost: $1229.00 USD Size: 2.3 MB Download (124): GENOM 2005 Download

Released: August 30, 2010  |  Added: September 03, 2010 | Visits: 4.804

Advanced Pathway Painter This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment... Platforms: Windows

License: Freeware Size: 4.54 MB Download (297): Advanced Pathway Painter Download

Added: March 15, 2010 | Visits: 881

Sequence Analysis Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in... Platforms: *nix

License: Freeware Size: 2.3 MB Download (90): Sequence Analysis Download

Added: August 01, 2013 | Visits: 252

Genome Workbench NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways,... Platforms: Mac

License: Freeware Size: 35.54 MB Download (16): Genome Workbench Download

Released: January 11, 2005  |  Added: September 11, 2006 | Visits: 6.137

EventStudio Sequence Diagram Designer Sequence diagrams are a very effective way of modeling an object oriented system. Unfortunately, most UML based modeling tools only offer primitive support for sequence diagrams. EventStudio provides advanced constructs for sequence diagram based object modeling. EventStudio supports generation... Platforms: Windows

License: Shareware Cost: $99.00 USD Size: 3.22 MB Download (302): EventStudio Sequence Diagram Designer Download

Released: July 11, 2005  |  Added: July 03, 2006 | Visits: 7.729

Sequence Diagram Editor Windows modeling tool that simplifies and speeds up the creation and maintenance of UML sequence diagrams, telecom/wireless call flow diagrams and process workflow diagrams. Sequence Diagram Editor performs automatic layout/formatting (across multiple pages if necessary) and supports additional... Platforms: Windows

License: Shareware Cost: $99.00 USD Size: 6.82 MB Download (538): Sequence Diagram Editor Download

Added: September 21, 2010 | Visits: 1.065

UML::Sequence UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl... Platforms: *nix

License: Freeware Size: 122.88 KB Download (142): UML::Sequence Download

Added: January 11, 2010 | Visits: 694

UML::Sequence::JavaSeq UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |... Platforms: *nix

License: Freeware Size: 122.88 KB Download (76): UML::Sequence::JavaSeq Download

Added: July 09, 2010 | Visits: 1.048

Chart::Sequence Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>... Platforms: *nix

License: Freeware Size: 15.36 KB Download (88): Chart::Sequence Download

Released: November 22, 2012  |  Added: November 22, 2012 | Visits: 278

WinBlast WinBlast is a handy, easy to use application specially designed to offer you a graphical front-end for NCBI BLAST. Platforms: Windows

License: Freeware Size: 1024 KB Download (97): WinBlast Download

Released: November 11, 2012  |  Added: November 11, 2012 | Visits: 367

Short Sequence Location Mapper Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The... Platforms: Windows

License: Freeware Download (73): Short Sequence Location Mapper Download

Released: November 10, 2012  |  Added: November 10, 2012 | Visits: 353

Sequence Clip Reporter for Mac OS Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels. Sequence Clip Reporter takes the tedious work out of creating clip usage reports... Platforms: Mac

License: Freeware Size: 3.6 MB Download (69): Sequence Clip Reporter for Mac OS Download

Released: November 07, 2012  |  Added: November 07, 2012 | Visits: 471

Sequence Chart Studio The Sequence Chart Studio, or scstudio for short, is designed as an user-friendly, Open Source drawing and verification instrument for Message Sequence Charts (basic MSC, HMSC) and UML Sequence Diagrams. It was developed in order to provide several verification algorithms and offers an open... Platforms: Windows

License: Freeware Download (27): Sequence Chart Studio Download

Released: December 11, 2012  |  Added: December 11, 2012 | Visits: 299

ORFprimer - primer design for ORFs ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences Platforms: Windows, Mac, BSD, Solaris, Linux

License: Freeware Size: 240.93 KB Download (28): ORFprimer - primer design for ORFs Download

Released: October 24, 2012  |  Added: October 24, 2012 | Visits: 453

BlastViewer BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and... Platforms: Mac, Java 1.5 or later

License: Freeware Size: 7.5 MB Download (34): BlastViewer Download

Added: May 10, 2013 | Visits: 364

Remove duplicates from a sequence The fastest way to remove duplicates from a sequence depends on some pretty subtle properties of the sequence elements, such as whether they're hashable, and whether they support full comparisons. This script defines the unique() function that tries three methods, from fastest to slowest, letting... Platforms: Windows, Mac, *nix, Python, BSD Solaris

License: Freeware Download (29): Remove duplicates from a sequence Download

Added: May 10, 2013 | Visits: 226

Getting th permutation of a sequence This script contains a function that given a sequence and a number n as parameters, returns the th permutation of the sequence (always as a list). Platforms: Windows, Mac, *nix, Python, BSD Solaris

License: Freeware Download (29): Getting th permutation of a sequence Download

Added: May 10, 2013 | Visits: 272

Splitting up a sequence This script allows you to split up a sequence in same-size (if possible) parts. Platforms: Windows, Mac, *nix, Python, BSD Solaris

License: Freeware Download (28): Splitting up a sequence Download

Added: May 10, 2013 | Visits: 241

Getting min/max in a sequence Getting min/max in a sequence script allows you to find the min/max value in a sequence as compared to a reference. Platforms: Windows, Mac, *nix, Python, BSD Solaris

License: Freeware Download (28): Getting min/max in a sequence Download

Added: May 10, 2013 | Visits: 256

Farey Sequence This function provides farey sequence, F(n), for any integer n.There's probably a more elegant solution out there, but I couldn't find it. Note: it doesn't prepend (0,1) and append (1,1)... Platforms: Windows, Mac, *nix, Python, BSD Solaris

License: Freeware Download (29): Farey Sequence Download

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